Williamson, S., Kelly, J. K., C. D. Bustamante, and M. E. Orive. 2004. A statistical characterization of consistent patterns of Human Immunodeficiency Virus evolution within infected patients. Mol. Biol. Evol. pdf

Williamson, S., A. Fledel-Alon, and C. D. Bustamante. 2004. Population genetics of polymorphism and divergence for diploid selection models with arbitrary dominance. Genetics 168(1):463-75. pdf

Kulathinal, R., S. A. Sawyer, C. D. Bustamante, D. I. Nurminsky, R. Ponce, J. M. Ranz, and D. L. Hartl. 2004. Selective Sweep in the Evolution of a New Sperm-Specific Gene in Drosophila. Book chapter to appear in Selective Sweeps Ed: Nurminsky.

Sawyer, S. A., R. J. Kulathinal, C. D. Bustamante, and D. L. Hartl. 2003. Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection. J. Mol. Evol. 57:S154-6. pdf

Gilad, Y., C. D. Bustamante, D. Lancet, and S. Pääbo. 2003. Natural selection on the olfactory receptor gene family in humans and chimpanzees. American Journal of Human Genetics. 73(3):489-501. pdf

Barrier, M., C. D. Bustamante, and M. D. Purugganan. 2003. Elevated selection intensities of rapidly-evolving Arabidopsis genes. Genetics 163(2):723-33. pdf

Bustamante, C.D., R. Nielsen, and D.L. Hartl. 2003. Maximum Likelihood and Bayesian Methods for Estimating the Distribution of Selective Effects among Classes of Mutations Using DNA Polymorphism Data. Theoretical Population Biology 63: 91 -103. pdf